Context And MissionThe Computational Biology group, led by ICREA professor Alfonso Valencia, is looking for a Master's student to work on a protein coevolution project, specifically on the identification of species-specific protein interactions in bacteria using phylogenetics and coevolution.The project will involve the analysis and interpretation of differences in diverse bacteria protein-protein interaction (PPI) networks to detect functional differences in specific metabolic pathways for a better understanding of different species of bacteria and their role in the ecosystem.The successful candidate will join a dynamic research group within the Life Sciences department, which integrates independent senior scientists that work on various aspects of computational biology, ranging from bioinformatics for genomics and proteomics to computational biochemistry and text mining.The Researcher will work in a highly sophisticated HPC environment, have access to systems and computational infrastructures, and establish collaborations with experts in different areas.Key DutiesTest and develop protocols to fine-tune and apply pLMs for studying relevant biological problems involving proteins.Perform sequence and structural-based analyses of proteins.Collaborate in the preparation and presentation of research projects.Participate in internal group meetings and other scientific discussions.RequirementsEducation- Degree in Bioinformatics, Biotechnology or any field related to biomedicineEssential Knowledge and Professional Experience- Knowledge of UNIX / Linux environments- Good programming skills (Python)- Experience with structural biology analysis tools (ChimeraX, ICM)Additional Knowledge and Professional Experience- Experience with data analysis tools (pandas, matplotlib, seaborn)- Experience with machine learning tools (scikit-learn)Competences- Good communication and presentation skills- Ability to work both independently and within a team- Fluency in spoken and written EnglishConditions- The position will be located at BSC within the Life Sciences Department.- We offer a full-time contract, a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, and an extensive training plan.- Duration: Open-ended contract due to technical and scientific activities linked to the project and budget duration.- Holidays: 23 paid vacation days plus 24th and 31st of December per our collective agreement.- Salary: We offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in Barcelona.- Starting date: 01/09/2023.
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